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Biology
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Using Multiple Alignments to Improve Gene Prediction
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning
Learning Interpretable SVMs for Biological Sequence Classification
The Factor Graph Network Model for Biological Systems
Recognition of Binding Patterns Common to a Set of Protein Structures
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Graph Theoretical Insights into Evolution of Multidomain Proteins
Discovery and Annotation of Genetic Modules
Consensus Folding of Unaligned RNA Sequences Revisited
A Regulatory Network Controlling Drosophila Development
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model
Motif Discovery Through Predictive Modeling of Gene Regulation
Rapid Protein Side-Chain Packing via Tree Decomposition
Towards an Integrated Protein-Protein Interaction Network
Stability of Rearrangement Measures in the Comparison of Genome Sequences