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Molecular biology
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Predicting Transcription Factor Binding Sites Using Structural Knowledge
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters
Avoiding Local Optima in Single Particle Reconstruction
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Mapping Molecular Landscapes Inside Cells
RNA-RNA Interaction Prediction and Antisense RNA Target Search
A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem
Modeling the Combinatorial Functions of Multiple Transcription Factors
Amino Acid Sequence Control of the Folding of the Parallel beta-Helix, the Simplest beta-Sheet Fold
Using Multiple Alignments to Improve Gene Prediction
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning
Improved Recombination Lower Bounds for Haplotype Data
HAPLOFREQ - Estimating Haplotype Frequencies Efficiently
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology
Information Theoretic Approaches to Whole Genome Phylogenies
Constructing a Smallest Refining Galled Phylogenetic Network
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length
Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks