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Molecular biology
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Predicting Transcription Factor Binding Sites Using Structural Knowledge
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters
Avoiding Local Optima in Single Particle Reconstruction
Motif Discovery Through Predictive Modeling of Gene Regulation
Rapid Protein Side-Chain Packing via Tree Decomposition
Towards an Integrated Protein-Protein Interaction Network
Reconstruction of Reticulate Networks from Gene Trees
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Mapping Molecular Landscapes Inside Cells
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Recognition of Binding Patterns Common to a Set of Protein Structures
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Improved Recombination Lower Bounds for Haplotype Data
HAPLOFREQ - Estimating Haplotype Frequencies Efficiently
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology
Information Theoretic Approaches to Whole Genome Phylogenies